LIENS
MITI (Mission pour les initiatives transverses et interdisciplinaires du CNRS)
ISC-PIF (Institut des Systèmes Complexes de Paris-Ile-de-France
Département MathNum (INRAE)
Métaprogramme DigitBio (INRAE)
IGMM (Institut de Génétique Moléculaire de Montpellier)
Le Fresnoy - Studio national des arts contemporains (Tourcoing)
LIVRES
Renormalization Methods (Wiley 1998). Version française: Eyrolles 1995
Chaos and Coarse-graining in Statistical Mechanics (Cambridge University Press 2008) avec P. Castiglione, M. Falcioni et A. Vulpiani. Version française: Belin 2008
Scale Invariance (Springer 2011) avec M. Laguës. Version française: Belin 2003 & 2008
From Newton to Mandelbrot. A primer in theoretical physics (Springer 2017, avec D. Stauffer et H.E. Stanley)
Kolmogorov’s heritage in mathematics (Springer 2007) avec E. Charpentier et N. Nikolski. Version française: Belin 2004
The scientific legacy of Poincaré (AMS publications 2010) avec E. Charpentier et E. Ghys. Version française: Belin 2006
Morphogenesis (Springer 2011) avec P. Bourgine. Version française: Belin 2006
Les déchiffreurs, avec J.F. Dars et A. Papillault (Belin, 2008), traduit en anglais, japonais, chinois et coréen
Collection Echelles (Belin)
Lecture Notes in Morphogenesis (Springer)
ARTICLES
Predictability of gene expression patterns from spectral properties of stylized transcriptional regulatory networks
Physical Review E 108:014402 (2023). hal-04153093
Active pollination of in a functionally dioecious Ficus species: An interplay between pollinator behaviour and floral morphology
Flora 302:152274 (2023) hal-04182812
Human Genomics 16 : 2 (2022). hal-03525806
Physical Review E 105: 014304 (2022). hal-03557705
Endogenous retroviral sequences behave as putative enhancers controlling gene expression through HP1-regulated long-range chromatin interactions
Cells 11: 2392 (2022) hal-03746539
Methods in Molecular Biology, vol. 2301, pp. 317-336, 2022. hal-03172656
Arts et Sciences, vol. 5, numéro spécial, pp. 109-115 (2021) hal-03833262
Frontiers in Molecular Biosciences 8: 778778 (2021) hal-03380240
npj Systems Biology and Applications 7:49 (2021) hal-03411512
Physica A 566, 125631(2021) hal-03081091
Chaos 31, 083131(2021) hal-03330932
Kinetic signature of cooperativity in the irreversible collapse of a polymer
Physical Review Letters, 121, 057801 (2018)
Diversity of foliar endophytic ascomycetes in the endemic Corsican pine forests
Fungal Ecology 36, 128-140 (2018)
Probabilistic analysis of recurrence plots generated by fractional Gaussian noise
Chaos 28, 085721 (2018)
AIP Conference Proceedings, 1882, 020027
Recurrence plots of discrete Gaussian stochastic processes
Physica D 330, 17--31 (2016)
Network concepst for analyzing 3D genome structure from chromosomal maps
European Journal of Physics, Nonlinear Biomedical Physics 4, 2 (2016)
The physics of epigenetics
Reviews of Modern Physics 88, 025002 (2016)
preprint
Mathematical models of radiation action on living cells: from the target theory to the modern approaches.
An historical and critical review.
Journal of Theoretical Biology 394, 93-101 (2016)
preprint
Relationship between the fractal dimension of the orthopyroxene and the temperature in mantle xenoliths
Geological Journal, 51, 748-759 (2016)
Beyond ectomycorrhizal bipartite networks: projected networks demonstrate contrasted patterns between early- and late- successional plants in Corsica
Frontiers in Plant Science 6, 881 (2015)
Contribution of topological domains and loop formation to 3D chromatin organization
Genes 6, 734-750 (2015)
Visions de la complexité: Le démon de Laplace dans tous ses états
Natures, Sciences, Sociétés 23, 42-53 (2015)
Shannon entropy: at the crossroads between probability, information theory, dynamical systems and statistical physics
Homogenized model linking microscopic and macroscopic dynamics of a biofilm:
application to growth in a plug flow reactor
Ecological Modelling 250, 15-24 (2013)
preprint
Genomics, Proteomics and Bioinformatics 10, 127-135 (2012) link to GPB
Electrostatics of DNA compaction in viruses, bacteria and eukaryotes :
functional insights and evolutionary perspective
Soft Matter 8, 9285-9301 (2012) link to Soft Matter
Network perspective on metabolic inconsistency
BMC Systems Biology 6, 41 (2012)
Matrix-bound PAI-1 supports membrane blebbing via RhoA-Rock1 signaling
PLoS One 7, e32204 (2012)
Building blocks of self- sustained activity in a simple deterministic model of excitable neural networks
Frontiers in Computational Neuroscience 6, 50 (2012)
C. Bécavin, J.M. Victor & A. Lesne
The condensed chromatin fiber :
an allosteric chemo-mechanical machine for signal transduction and genome processing
Physical Biology 9, 013001 (2012)
Stochastic resonance in discrete excitable dynamics on graphs
Chaos, Solitons and Fractals 45, 611-618 (2012)
G. Debret, C. Jung, J.P. Hugot, L. Pascoe, J.M. Victor & A. Lesne
Genetic susceptibility to a complex disease: The key role of functional redundancy
History and Philosophy of Life Sciences (special issue on: Causation and Disease in the post-genomic era) 33, 497-515 (2011)
J.L. Blanc, L. Pezard & A. Lesne
Mutual information rate of a pair of symbolic sequences
Physical Review E 84, 036214 (2011)
Improving the efficiency of Multidimensional Scaling in the analysis
of high-dimensional data using Singular Value Decomposition
Bioinformatics 27, 1413-1421 (2011)
When a collective outcome triggers a rare individual event : a mode of metastatic process in a cell population
Mathematical Population Studies 17, 136-165 (2010)
Preprint
International Journal of Bifurcation and Chaos 20, 1731-1749 (2010)
C. Bécavin, M. Barbi, J.M. Victor & A. Lesne
Transcription within condensed chromatin : Steric hindrance facilitates elongation
Biophysical Journal 98, 824-833 (2010)
M.T. Hütt & A. Lesne.
Interplay between topology and dynamics in excitation patterns on hierarchical graphs
Frontiers in Neuroinformatics 3, 28 (2010)
Entropy estimation of very short symbolic sequences
Physical Review E 79, 046208 (2009)
Complexité du vivant, sélection naturelle et évolution
Natures, Sciences, Sociétés 16, 150-153 (2008)
Commentaire:
A. Lesne
À propos du texte Complexité du vivant, sélection naturelle et évolution
Natures, Sciences, Sociétés 17, 55-56 (2009)
A. Lesne & A. Benecke
Feature context-dependency and complexity reduction in probability landscapes for integrative genomics
Theoretical Biology and Medical Modelling 5, 21 (2008)
Probability landscapes for integrative genomics
Theoretical Biology and Medical Modelling 5, 9 (2008)
Quantifying neural correlations using Lempel-Ziv complexity
pp. 40-43 in Proceedings of the Second french conference on Computational Neuroscience (Neurocomp’08)
edited by L.U. Perrinet et E. Daucé, ISBN 978-2-9532965-0-1 (2008)
Behavioral sequence analysis reveals a novel role for β 2∗ nicotinic receptors in exploration
PLoS Computational Biology 4, e1000229 (2008)
A. Lesne
Robustness : confronting lessons from physics and biology
Biological Reviews 83, 509-532 (2008)
K. Doba, J.L. Nandrino, A. Lesne, C. Humez & L. Pezard
Organization of the narrative components in the autobiographical speech of anorexic
patients : A statistical and non-linear dynamical analysis
New Ideas in Psychology 26, 295-308 (2008)
L. Pezard & A. Lesne
Cellular automata approach of transmembrane ionic currents
Journal of Integrative Neuroscience 7, 271-286 (2008)
H. Krivine, A. Lesne & J. Treiner
Discrete-time and continuous-time modeling: some bridges and gaps
Mathematical Structures in Computer Sciences 17, 261-276 (2007) link to MSCS
Discrete vs continuous controversy in physics
Mathematical Structures in Computer Sciences 17, 185-223 (2007) link to MSCS
K. Doba, L. Pezard, A. Lesne, V. Christophe & J.L. Nandrino
Dynamics of emotional expression in autobiographical speech of patients with anorexia nervosa
Psychological Reports 101, 237-249 (2007)
Complex networks: from graph theory to biology
Letters in Mathematical Physics 78, 235-262 (2006)
A.R. Carvunis, M. Latapy, A. Lesne, C. Magnien & L. Pezard
Dynamics of three-state excitable units on random vs power-law networks
Physica A 367, 595-612 (2006)
J. Mozziconacci, C. Lavelle, M. Barbi, A. Lesne & J.M. Victor.
A physical model for the condensation and decondensation of eukaryotic chromosomes
FEBS Letters 580, 368-372 (2006)
Chromatin fiber functional organization: some plausible models
EPJE 19, 279-290, Focus Point on Structure and Dynamics of DNA (2006)
see also the commentary of this paper by H. Schiessel, same issue (p. 291-292)
A. Lesne.
The chromatin regulatory code: beyond an histone code
EPJE 19, 375-377, Focus Point on Structure and Dynamics of DNA (2006)
G.G. Cabal, S. Rodriguez-Navarro, A. Genevesio, J.C. Olivo-Marin, C. Zimmer,
O. Gadal, F. Feuerbach-Fournier, A. Lesne, H. Buc, E.C. Hurt & Ulf Nehrbass
Molecular analysis of SAGA mediated nuclear pore gene gating activation in yeast
Nature 441, 770-773 (2006)
Supplementary material
voir le commentaire dans le Journal du CNRS, octobre 2006, p. 12
J.L.Nandrino, L. Pezard, K. Doba, A. Lesne & V. Christophe
Autobiographical memory deficit in anorexia nervosa: emotion regulation and effect of illness duration
Journal of Psychosomatic Research 61, 537-543 (2006)
C. Petit, F. Pietri-Rouxel, A. Lesne,T. Leste-Lasserre, D. Mathez, R.K. Naviaux, P. Sonigo, F. Bouillaud & J. Leibowitch
Oxygen consumption by cultured human cells is impaired under mitochondrial DNA depletive NRTI cocktail
Mitochondrion 5, 154-161 (2005)
C. Gruber & A. Lesne.
Hamiltonian model of heat conductivity and Fourier law
Physica A 351, 358-372 (2005)
J.P. Aubin & A. Lesne
Constructing and exploring wells of energy landscapes
J. Math. Phys. 46, 1-16 (2005)
A. Lesne
Terms from statistical physics and dynamical systems of relevance for complex systems science
Cybergeo, No 316, July 7th 2005
European Journal of Geography, ISSN 1278--3366
(longer preliminary version)
C. Gruber, S. Pache & A. Lesne
On the Second Law of thermodynamics and the piston problem
J. Stat. Phys. 117, 739-772 (2004)
H. Krivine & A. Lesne.
Mathematical puzzle in the analysis of a low-pitched filter
Am. J. Phys. 71, 31-33 (2003)
C. Gruber, S. Pache & A. Lesne.
Two-time-scale relaxation towards thermal equilibrium of the enigmatic piston
J. Stat. Phys. 112, 1199-1228 (2003)
C. Gruber, S. Pache & A. Lesne.
Deterministic motion of the controversial piston in the thermodynamic limit
J. Stat. Phys. 108, 669-701 (2002)
J.M. Victor, E. Ben-Haïm & A. Lesne
Intercalation and buckling instability of DNA linker within locked chromatin fiber
Phys. Rev. E 66, 060901 (2002)
E. Ben-Haïm, A. Lesne & J.M. Victor.
Adaptive elastic properties of chromatin fiber
Physica A 314, 592-599 (2002)
E. Ben-Haïm, A. Lesne & J.M. Victor
Chromatin: a tunable spring at work inside chromosomes
Phys. Rev. E 64, 051921 (2001)
P. Sotta, A. Lesne & J.M. Victor
The coil-globule transition for a polymer chain confined in a tube: a Monte Carlo simulation
J. Chem. Phys. 113, 6966-6973 (2000)
Monte Carlo simulation of a grafted polymer chain confined in a tube
J. Chem. Phys. 112, 1565-1573 (2000)
J.B. Imbert, A. Lesne & J.M. Victor
On the distribution of the order parameter of the coil-globule transition
Phys. Rev.E 56, 5630-5647 (1999)
B. Gaveau, A. Lesne & L.S. Schulman
Spectral signatures of hierarchical relaxation
Phys. Lett. A 258, 222-228 (1999)
A. Lemarchand, A. Lesne & M. Mareschal
Langevin approach to a chemical wave-front: selection of the propagation velocity by internal noise
Phys. Rev. E 51, 4457-4465 (1995)
Chemical wave front in two dimensions
Phys. Rev. E 48, 1568-1571 (1993)
P. Collet & A. Lesne
Renormalization group analysis of some dynamical systems with noise
J. Stat. Phys. 57, 967-992 (1989)
F. Argoul, A. Arneodo, P. Collet & A. Lesne
Transitions to chaos in the presence of an external periodic field: cross-over effect in the measure of critical exponents
Europhys. Lett. 3, 643-651 (1987)
Publications are under copyright, and available here only for restricted use
BOOKS
Responsable éditoriale aux Éditions Cassini
site des Editions Cassini
A. Lesne (éd.) Cell Population Dynamics in Cancer Progression
special issue of Mathematical Population Studies, volume 17, issue 3 (2010)
link to the issue on the publisher site
editorial of the special issue
P. Castiglione, M. Falcioni, A. Lesne, A. Vulpiani.
Chaos and coarse-graining in statistical mechanics
Cambridge University Press (2008)
book presentation
French version: Chaos et approches multiéchelles en physique statistique
Collection Échelles, Belin (2008)
présentation du livre
J.F. Dars A. Lesne, A. Papillault (éditeurs)
Les Déchiffreurs. Voyage en mathématiques
Belin (2008).
présentation du livre
English version: The unravelers. Mathematical snapshots
A.K. Peters (2008)
book presentation
Japanese version: Springer Japan (2008)
Chinese version: Higher Education Press (2010)
Corean version: Kungree (2014)
A. Lesne, P. Bourgine (éditeurs)
Morphogenèse. L'origine des formes
Collection Échelles, Belin, Paris (2006)
présentation du livre
English version Morphogenesis
Springer (2011)
book presentation
a sample can be read online here
E. Charpentier, E. Ghys, A. Lesne (éditeurs)
L'héritage scientifique d'Henri Poincaré
Collection Échelles, Belin, Paris (2006)
présentation du livre
English version: The scientific legacy of Henri Poincaré
AMS Publications (2010)
book presentation
E. Charpentier, A. Lesne, N. Nikolski (éditeurs).
L'héritage de A.N. Kolmogorov en mathématiques
Collection Échelles, Belin, Paris (2004) ISBN 2-7011-3669-5
présentation du livre
English version: The legacy of A.N. Kolmogorov in mathematics
Springer (2007)
a sample can be read online here
book presentation (hardcover)
book presentation (softcover)
M. Laguës, A. Lesne
Invariances d'échelle. Des changements d'état à la turbulence
Collection Échelles, Belin, Paris (2003) ISBN 2-7011-3175-8
Seconde édition: 2008
présentation du livre
English version: Scale Invariance
Springer 2011
book presentation
D. Stauffer, H.E. Stanley, A. Lesne
Cours de Physique. De Newton à Mandelbrot
Springer, Paris (1999). ISBN 2-287-59674-7
couverture
présentation
table des matières
Eyrolles, Paris (1995). ISBN 2-212-05830-6
couverture
présentation
table des matières
English version: Renormalization Methods
Wiley, Chichester (1998). ISBN 0-471-96689-4
book presentation
contents
Translation
La construction du vivant. Gènes, embryons et évolution
J. Maynard Smith
Editions Cassini, Paris (2001) ISBN --84225-041-9
couverture
présentation
BOOK CHAPTERS
PALAIS n°25, pp. 146–158, Le Rêve des Formes / The Dream of Forms, June 2017
Comprendre les mathématiques, les textes fondamentaux, pp. 72–73, Le Point Références, Février-Mars 2017
Time variable and time scales in natural systems and their modeling
in The Nature of Time, The Time of Nature, pp. 63–74, edited by C. Bouton and P. Huneman
A. Lesne
Symétries et morphogenèse
link to DocSciences
pp. 121-154 in Vision of Oneness, edited by I. Licata and A.J. Sakaji, Aracne Editrice, Roma (2011)
Natures, Sciences et Sociétés15, 53-56 (2007)
pdf file
A. Lesne
Physical modeling of diffusive movements inside the nucleus: from classical theories to open challenges
Journées Thématiques: Organisation, dynamique et fonction des chromosomes
(23-25 mars 2005, INSTN, CEA-Saclay), organisé par H. Buc, M.-C. Bellissent-Funel, O. Hyrien, M. Yaniv
pdf file (short)
Programme
disponible en ligne, de même que les pdf file
A. Lesne
Du discret au continu (et inversement): modèles et réalité
École Thematique CNRS-INRA: Biologie intégrative: l'organisation du vivant, Berder (Morbihan), 16-22 Mars 2003
pdf file
A. Lesne
Auto-organisation en biologie
École Thématique CNRS-INRA: Forme et Information en Biologie, Berder (Morbihan), 17-23 Mars 2002
arXiv:cond-mat/0005049
A. Lesne & J.M. Victor
First-order theta-point of a single polymer chain
arxiv.org/abs/0710.2195
A. Lesne
I - Introduction to renormalization in statistical mechanics
II - Introduction to renormalization in dynamical systems.
III - Regularization and renormalization group
Workshop on renormalization in mathematics and physics, Paris, IHP, 14-16 Juin 1996
pdf file III
Collection Echelles (Belin)
Réseau National des Systèmes Complexes
Ecole de Berder 2008 (robustesse et adaptation en biologie)
Ecole de Berder 2010 (histoire et mémoire en biologie)
Ecole de Berder 2012 (naturel et artificiel: le vivant et ses représentations)
Physique de l'architecture génomique